Turn the motor over by hand with the balancer so the small divit on the back of the balancer is on 0 or top dead center on the compression stroke, you can use a compression gauge for this or I just used a mirror and light to shine in the number one cylinder to see the piston. Third take out number one sparkplug and replace the bottom cover by maybe two bolts so that you can see marks on cover, next replace the balancer and bolt. The way you line these marks up is easy if you take the time, First, if you are changing the timing belt you pull the balancer and both top and bottom plastic covers,(do not try to pull top cover off before you take off balencer and the motor mount off or you will just break it.), Second after covers are removed you will have access to the timing belt, you can now remove it by loosening the tensioner bolt and pushing down on the tensioner wheel, the belt then can be taken off.
I had a tough time with the timing marks. I have just replaced my water pump on my 1998 RAVE4, also, the timing belt and the other two belts. SOURCE: how to find timing belts marks toyota rav4 2l